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Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp.

Pakull, Birte GND; Mader, Malte GND; Kersten, Birgit GND; Ekue, Marius Rodrigue Mensah GND; Bouka Dipelet, Ulrich G.; Paulini, Maike; Bouda, Zoéwindé Henri-Noel; Degen, Bernd GND

100 SNP and one Indel markers were developed for Khaya using a combination of restriction associated DNA sequencing and low coverage MiSeq genome sequencing. The marker set was successfully used to genotype a set of 1919 individuals, representing 5 Khaya species from 18 African countries, using MassARRAY®iPLEX™ genotyping.

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Published in:
Conservation genetics resources
Vol. 8, H. 3p. 293-297
Date Issued:
2016
DOI:
10.1007/s12686-016-0557-4
Language:
English
Type of Resource:
Text
Keywords:
Khaya; SNP; tropical tree; MassARRAY; iPLEX; genetic differentiation
DDC subject of DNB:
630 Agriculture
Institution:
Thünen-Institut, Institut für Forstgenetik

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Pakull, Birte / Mader, Malte / Kersten, Birgit / et al: Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp.. 2016.

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