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  • Origin and evolution of the bread wheat D genome
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Origin and evolution of the bread wheat D genome

ORCID
0000-0001-6619-5996
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Cavalet-Giorsa, Emile;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
González-Muñoz, Andrea;
ORCID
0000-0002-9232-4680
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Athiyannan, Naveenkumar;
Affiliation
Faculty of Land and Food Systems, The University of British Columbia (UBC), Vancouver, British Columbia, Canada
Holden, Samuel;
Affiliation
Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Salhi, Adil;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Gardener, Catherine;
ORCID
0000-0001-5935-2578
Affiliation
John Innes Centre, Norwich Research Park, Norwich, UK
Quiroz-Chávez, Jesús;
ORCID
0000-0001-5337-7109
Affiliation
Institute of Molecular Biology and Biotechnologies, Ministry of Science and Education of the Republic of Azerbaijan, Baku, Azerbaijan
Rustamova, Samira M.;
ORCID
0000-0003-2967-2137
Affiliation
Wheat Research Department, Field Crops Research Institute, Agricultural Research Center (ARC), Giza, Egypt
Elkot, Ahmed Fawzy;
ORCID
0000-0002-4914-2697
Affiliation
Department of Agroecology, Aarhus University, Slagelse, Denmark
Patpour, Mehran;
Affiliation
Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan; International Maize and Wheat Improvement Centre (CIMMYT), c/o CAAS, Beijing, China
Rasheed, Awais;
ORCID
0000-0002-3377-4040
Affiliation
State Key Laboratory of Crop Gene Resources and Breeding and National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China
Mao, Long;
ORCID
0000-0002-6234-1789
Affiliation
Commonwealth Scientific and Industrial Research Organization (CSIRO), Agriculture and Food, Canberra, New South Wales, Australia
Lagudah, Evans S.;
ORCID
0000-0002-5421-2872
Affiliation
Commonwealth Scientific and Industrial Research Organization (CSIRO), Agriculture and Food, Canberra, New South Wales, Australia; Present address: Centre for Crop Health School of Agriculture and Environmental Science, University of Southern Queensland, Toowoomba, Queensland, Australia
Periyannan, Sambasivam K.;
ORCID
0000-0002-6045-9169
Affiliation
Institute for Cereal Crops Improvement, School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel
Sharon, Amir;
Affiliation
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
Himmelbach, Axel;
GND
129475440
ORCID
0000-0002-6742-265X
Affiliation
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
Reif, Jochen C.;
Affiliation
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
Knauft, Manuela;
GND
1052596703
ORCID
0000-0001-6373-6013
Affiliation
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
Mascher, Martin;
GND
120077000
ORCID
0000-0003-3011-8731
Affiliation
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany; Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany
Stein, Nils;
Affiliation
John Innes Centre, Norwich Research Park, Norwich, UK
Chayut, Noam;
ORCID
0000-0002-7271-8914
Affiliation
John Innes Centre, Norwich Research Park, Norwich, UK
Ghosh, Sreya;
GND
1059141701
Affiliation
Julius Kühn Institute (JKI), Institute for Resistance Research and Stress Tolerance, Germany
Perovic, Dragan;
ORCID
0000-0002-4864-9744
Affiliation
Bioscience Core Lab, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Putra, Alexander;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Perera, Ana B.;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Yu, Guotai;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Hu, Chia-Yi;
ORCID
0000-0001-9078-183X
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; Present address: Centre d’anthropobiologie et de génomique de Toulouse (CAGT), Laboratoire d’Anthropobiologie et d’Imagerie de Synthèse, CNRS UMR 5288, Faculté de Médecine de Purpan, Toulouse, France
Ahmed, Hanin Ibrahim;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Laquai, Konstanze D.;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Rivera, Luis F.;
GND
1261120299
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Chen, Renjie;
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia; Present address: National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China
Wang, Yajun;
ORCID
0000-0002-7108-3574
Affiliation
Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Gao, Xin;
ORCID
0000-0002-9513-855X
Affiliation
Department of Plant Pathology, Kansas State University, Manhattan, KS, USA
Liu, Sanzhen;
ORCID
0000-0002-0135-3911
Affiliation
Department of Plant Pathology and Wheat Genetics Resource Center, Kansas State University, Manhattan, KS, USA
Raupp, W. John;
GND
1056764724
Affiliation
Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA
Olson, Eric L.;
ORCID
0000-0002-0090-7193
Affiliation
National Institute of Agricultural Sciences, Rural Development Administration, Jeonju, South Korea
Lee, Jong-Yeol;
Affiliation
School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
Chhuneja, Parveen;
Affiliation
School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
Kaur, Satinder;
ORCID
0000-0002-4191-1068
Affiliation
Plant Breeding Institute, School of Life and Environmental Sciences, University of Sydney, Cobbitty, New South Wales, Australia
Zhang, Peng;
Affiliation
Plant Breeding Institute, School of Life and Environmental Sciences, University of Sydney, Cobbitty, New South Wales, Australia
Park, Robert F.;
Affiliation
Plant Breeding Institute, School of Life and Environmental Sciences, University of Sydney, Cobbitty, New South Wales, Australia
Ding, Yi;
Affiliation
Triticeae Research Institute, Sichuan Agricultural University, Chengdu, China
Liu, Deng-Cai;
Affiliation
Department of Biology and Microbiology, South Dakota State University, Brookings, SD, USA
Li, Wanlong;
Affiliation
Institute of Botany, Plant Physiology and Genetics, Tajik National Academy of Sciences, Dushanbe, Tajikistan
Nasyrova, Firuza Y.;
ORCID
0000-0002-0427-6528
Affiliation
Department of Plant Sciences, University of California, Davis, CA, USA
Dvorak, Jan;
Affiliation
Faculty of Land and Food Systems, The University of British Columbia (UBC), Vancouver, British Columbia, Canada
Abbasi, Mehrdad;
Affiliation
Faculty of Land and Food Systems, The University of British Columbia (UBC), Vancouver, British Columbia, Canada
Li, Meng;
GND
1025232917
Affiliation
Faculty of Land and Food Systems, The University of British Columbia (UBC), Vancouver, British Columbia, Canada
Kumar, Naveen;
Affiliation
Department of Plant Sciences, University of the Free State, Bloemfontein, South Africa
Meyer, Wilku B.;
ORCID
0000-0003-2769-5546
Affiliation
Department of Plant Sciences, University of the Free State, Bloemfontein, South Africa
Boshoff, Willem H. P.;
ORCID
0000-0001-7961-5363
Affiliation
Department of Plant Pathology, University of Minnesota, Saint Paul, MN, USA
Steffenson, Brian J.;
ORCID
0000-0002-8447-2886
Affiliation
Department of Plant Pathology, University of Minnesota, Saint Paul, MN, USA
Matny, Oadi;
ORCID
0000-0002-0393-6432
Affiliation
Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA
Sharma, Parva K.;
ORCID
0000-0001-7297-4048
Affiliation
Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA
Tiwari, Vijay K.;
ORCID
0000-0002-0707-2504
Affiliation
Nottingham Wheat Research Centre, School of Biosciences, University of Nottingham, Loughborough, UK
Grewal, Surbhi;
ORCID
0000-0002-7536-3856
Affiliation
University of Saskatchewan, Crop Development Centre, Agriculture Building, Saskatoon, Saskatchewan, Canada
Pozniak, Curtis J.;
GND
1207845779
Affiliation
University of Saskatchewan, Crop Development Centre, Agriculture Building, Saskatoon, Saskatchewan, Canada; Present address: Department of Plant Science, University of Manitoba, Winnipeg, Manitoba, Canada
Chawla, Harmeet Singh;
ORCID
0000-0003-2663-1006
Affiliation
University of Saskatchewan, Crop Development Centre, Agriculture Building, Saskatoon, Saskatchewan, Canada
Ens, Jennifer;
Affiliation
Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Western Bank, Sheffield, UK
Dunning, Luke T.;
Affiliation
Cereal Disease Laboratory, USDA-ARS, St Paul, MN, USA
Kolmer, James A.;
ORCID
0000-0002-9160-2052
Affiliation
Crop Improvement and Genetics Research Unit, Western Regional Research Center, USDA-ARS, Albany, CA, USA
Lazo, Gerard R.;
Affiliation
Crop Improvement and Genetics Research Unit, Western Regional Research Center, USDA-ARS, Albany, CA, USA
Xu, Steven S.;
Affiliation
Crop Improvement and Genetics Research Unit, Western Regional Research Center, USDA-ARS, Albany, CA, USA
Gu, Yong Q.;
Affiliation
Peanut and Small Grains Research Unit, USDA-ARS, Stillwater, OK, USA
Xu, Xianyang;
ORCID
0000-0002-9814-1770
Affiliation
John Innes Centre, Norwich Research Park, Norwich, UK
Uauy, Cristobal;
ORCID
0000-0001-9082-1432
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Abrouk, Michael;
ORCID
0000-0001-9218-6452
Affiliation
Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Bougouffa, Salim;
Affiliation
Faculty of Land and Food Systems, The University of British Columbia (UBC), Vancouver, British Columbia, Canada; Present address: Faculty of Agricultural, Life and Environmental Sciences, University of Alberta, Edmonton, Canada
Brar, Gurcharn S.;
ORCID
0000-0003-4044-4346
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Wulff, Brande B. H.;
GND
1116530546
ORCID
0000-0001-6912-7411
Affiliation
Plant Science Program, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
Krattinger, Simon G.

Bread wheat (Triticum aestivum) is a globally dominant crop and major source of calories and proteins for the human diet. Compared with its wild ancestors, modern bread wheat shows lower genetic diversity, caused by polyploidisation, domestication and breeding bottlenecks1,2. Wild wheat relatives represent genetic reservoirs, and harbour diversity and beneficial alleles that have not been incorporated into bread wheat. Here we establish and analyse extensive genome resources for Tausch’s goatgrass (Aegilops tauschii), the donor of the bread wheat D genome. Our analysis of 46 Ae. tauschii genomes enabled us to clone a disease resistance gene and perform haplotype analysis across a complex disease resistance locus, allowing us to discern alleles from paralogous gene copies. We also reveal the complex genetic composition and history of the bread wheat D genome, which involves contributions from genetically and geographically discrete Ae. tauschii subpopulations. Together, our results reveal the complex history of the bread wheat D genome and demonstrate the potential of wild relatives in crop improvement.

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Published in:
Nature : the international weekly journal of science
Vol. 633p. 848-855
Volume:
633
Date Issued:
2024
Date Issued (print):
26.09.2024
Date Issued (online):
14.08.2024
DOI:
10.1038/s41586-024-07808-z
Language:
English
Type of Resource:
Text
Extent:
29 pages
Publisher:
Springer Science and Business Media LLC
DDC subject of DNB:
630 Agriculture
URL:
https://www.nature.com/articles/s41586-024-07808-z
Institution:
Julius Kühn-Institute, Institute for Resistance Research and Stress Tolerance

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