[Dataset] : Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method

Joeres, Maike; Schares, Gereon; Maksimov, Pavlo

doi:10.5281/zenodo.8248524

published

[Dataset] : Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method

Joeres, Maike ; Schares, Gereon ; Maksimov, Pavlo

The data set comprises 164 FASTQ files generated with an Ion AmpliSeq-based genotyping method for Toxoplasma gondii and a BED file used for the design of the Ion AmpliSeq primer panel. The FASTA file named as "Tgondii_IonAmpliSeq_Reference_ME49" was used as a reference for mapping and data analysis of the FASTQ files. The FASTA file named as "Tgondii_IonAmpliSeq_Results_SNPs" includes all SNPs identified within the 164 FASTQ files relative to the reference.