[Dataset] : Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method

Joeres, Maike; Schares, Gereon; Maksimov, Pavlo

doi:10.5281/zenodo.8248524

Veröffentlicht

[Dataset] : Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method

Joeres, Maike ; Schares, Gereon ; Maksimov, Pavlo

The data set comprises 164 FASTQ files generated with an Ion AmpliSeq-based genotyping method for Toxoplasma gondii and a BED file used for the design of the Ion AmpliSeq primer panel. The FASTA file named as "Tgondii_IonAmpliSeq_Reference_ME49" was used as a reference for mapping and data analysis of the FASTQ files. The FASTA file named as "Tgondii_IonAmpliSeq_Results_SNPs" includes all SNPs identified within the 164 FASTQ files relative to the reference.

Referenziert von

Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method

Einordnung

Erschienen in:: Zenodo
Auflage:: all versions
Datum der Veröffentlichung:: 15.08.2023
DOI:: 10.5281/zenodo.8248524
Sprache:: Englisch
Ressourcentyp:: Text
Projektname:: Promoting One Health in Europe through joint actions on foodborne zoonoses, antimicrobial resistance and emerging microbiological hazards.
Projekt-Akronym:: One Health EJP
Grant-ID:: 773830
Programm-ID:: H2020
Organisation-ID:: EC
Verlag:: Zenodo
DDC-Sachgruppe der DNB:: 570 Biowissenschaften, Biologie
Link URL:: https://zenodo.org/records/8377016
Einrichtung:: Friedrich-Loeffler-Institut, Institut für Epidemiologie
Physischer Standort:: SD/2023/467-F