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allodb: An R package for biomass estimation at globally distributed extratropical forest plots

ORCID
0000-0001-8305-6672
Affiliation
Conservation Ecology Center, Smithsonian National Zoo & Conservation Biology Institute, Front Royal, United States
Gonzalez-Akre, Erika;
ORCID
0000-0002-3473-1982
Affiliation
Conservation Ecology Center, Smithsonian National Zoo & Conservation Biology Institute, Front Royal, United States
Piponiot, Camille;
ORCID
0000-0002-1986-7988
Affiliation
Forest Global Earth Observatory, Smithsonian Institution, Washington, United States
Lepore, Mauro;
ORCID
0000-0002-4519-481X
Affiliation
Conservation Ecology Center, Smithsonian National Zoo & Conservation Biology Institute, Front Royal, United States
Herrmann, Valentine;
ORCID
0000-0002-2560-0710
Affiliation
Wildland Resources Department, Utah State University, Logan, United States
Lutz, James A.;
ORCID
0000-0001-7476-5928
Affiliation
Department of Biology, Wilfrid Laurier University, Waterloo, Canada
Baltzer, Jennifer L.;
ORCID
0000-0001-8745-9137
Affiliation
Ecology and Evolutionary Biology, University of Michigan, Ann Harbor, United States
Dick, Christopher W.;
Affiliation
Department of Environmental Studies, University of California, Santa Cruz, United States
Gilbert, Gregory S.;
ORCID
0000-0003-0774-4849
Affiliation
Biodiversity & Landscape Modeling Group, University of Alberta, Edmonton, Canada
He, Fangliang;
ORCID
0000-0002-1314-2257
Affiliation
Faculty of Forest Science and Resource Management, Technical University of Munich, Freising, Germany
Heym, Michael;
Affiliation
Deptartment of Entomology and Plant Pathology, North Carolina State University, Raleigh, United States
Huerta, Alejandra I.;
ORCID
0000-0002-4660-0314
Affiliation
Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Panama, Panama
Jansen, Patrick A.;
Affiliation
School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, United States
Johnson, Daniel J.;
GND
1192778561
ORCID
0000-0001-5065-9979
Affiliation
Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany
Knapp, Nikolai;
ORCID
0000-0002-3848-2119
Affiliation
Department of Forest Ecology, Silva Tarouca Research Institute, Brno, Czech Republic
Král, Kamil;
ORCID
0000-0001-6112-7783
Affiliation
Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, China
Lin, Dunmei;
GND
1215850808
ORCID
0000-0002-3503-4783
Affiliation
School of Geography and the Environment, University of Oxford, Oxford, United Kingdom
Malhi, Yadvinder;
Affiliation
Smithsonian Environmental Research Center, Edgewater, United States
McMahon, Sean M.;
ORCID
0000-0002-2058-8468
Affiliation
Department of Biology, Washington University, St. Louis, United States
Myers, Jonathan A.;
ORCID
0000-0001-7822-3560
Affiliation
The Harvard Forest, Petersham, United States
Orwig, David;
ORCID
0000-0002-8608-6268
Affiliation
Department of Ecology, Sun Yat-sen University, Guangzhou, China
Rodríguez-Hernández, Diego I.;
ORCID
0000-0002-6788-2410
Affiliation
School of Biological Sciences, University of Nebraska, Lincoln, United States
Russo, Sabrina E.;
Affiliation
Smithsonian Environmental Research Center, Edgewater, United States
Shue, Jessica;
ORCID
0000-0003-1207-8852
Affiliation
Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
Wang, Xugao;
Affiliation
Natural & Applied Sciences, University of Wisconsin, Green Bay, United States
Wolf, Amy;
Affiliation
Forestry Institute, Ningbo Academy of Agricultural Science, Ningbo, China
Yang, Tonghui;
ORCID
0000-0002-8596-7522
Affiliation
Forest Global Earth Observatory, Smithsonian Tropical Research Institute, Panama, Panama
Davies, Stuart J.;
ORCID
0000-0001-8461-9713
Affiliation
Conservation Ecology Center, Smithsonian National Zoo & Conservation Biology Institute, Front Royal, United States
Anderson-Teixeira, Kristina J.

Allometric equations for calculation of tree above-ground biomass (AGB) form the basis for estimates of forest carbon storage and exchange with the atmosphere. While standard models exist to calculate forest biomass across the tropics, we lack a standardized tool for computing AGB across boreal and temperate regions that comprise the global extratropics.
Here we present an integrated R package, allodb, containing systematically selected published allometric equations and proposed functions to compute AGB. The data component of the package is based on 701 woody species identified at 24 large Forest Global Earth Observatory (ForestGEO) forest dynamics plots representing a wide diversity of extratropical forests.
A total of 570 parsed allometric equations to estimate individual tree biomass were retrieved, checked and combined using a weighting function designed to ensure optimal equation selection over the full tree size range with smooth transitions across equations. The equation dataset can be customized with built-in functions that subset the original dataset and add new equations. Although equations were curated based on a limited set of forest communities and number of species, this resource is appropriate for large portions of the global extratropics and can easily be expanded to cover novel forest types.

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