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  • The OHEJP BeONE Project – Escherichia coli genome assembly dataset

The OHEJP BeONE Project – Escherichia coli genome assembly dataset

Affiliation
National Institute of Health Doutor Ricardo Jorge (INSA), Portugal
Mixão, Verónica;
Affiliation
National Institute of Health Doutor Ricardo Jorge (INSA), Portugal
Pinto, Miguel;
Affiliation
National Institute of Health Doutor Ricardo Jorge (INSA), Portugal
Gomes, João Paulo;
Affiliation
National Institute of Health Doutor Ricardo Jorge (INSA), Portugal
Sobral, Daniel;
Affiliation
German Federal Institute for Risk Assessment (BfR), Germany
Brendebach, Holger;
Affiliation
German Federal Institute for Risk Assessment (BfR), Germany
Deneke, Carlus;
Affiliation
German Federal Institute for Risk Assessment (BfR), Germany
Tausch, Simon;
Affiliation
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise (IZSAM), Italy
Di Pasquale, Adriano;
Affiliation
National Institute of Public Health and the Environment (RIVM), Netherlands
Swart-Coipan, Claudia;
Affiliation
National Veterinary Research Institute of Poland (PIWET), Poland
Iwan, Ewelina;
GND
1022638580
Linde, Jörg;
Affiliation
Norwegian Veterinary Institute (NVI), Norway
Lagesen, Karin;
Affiliation
Animal and Plant Health Agency (APHA), United Kingdom
Petrovska, Liljana;
Affiliation
Norwegian Institute of Public Health (NIPH), Norway
Umaer Naseer, Mohammed;
Affiliation
Technical University of Denmark (DTU), Denmark
Sommer Kaas, Rolf;
Affiliation
Robert Koch Institute (RKI), Germany
Simon, Sandra;
Affiliation
Statens Serum Institut (SSI), Denmark
Joensen, Katrine;
Affiliation
Statens Serum Institut (SSI), Denmark
Kiil, Kristoffer;
Affiliation
Statens Serum Institut (SSI), Denmark
Nielsen, Sofie;
Affiliation
National Institute of Health Doutor Ricardo Jorge (INSA), Portugal
Borges, Vítor

This dataset comprises the genome assemblies of 308 Escherichia coli samples collected by the BeONE Consortium on behalf of the One Health European Joint Programme “BeONE: Building Integrative Tools for One Health Surveillance” (https://onehealthejp.eu/jrp-beone/). Additionally, a complementary dataset is also made available (https://zenodo.org/record/7120057), comprising genome assemblies of 1,999 E. coli samples selected among the Whole-Genome Sequencing (WGS) data publicly available in the European Nucleotide Archive (ENA) or in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA).

Category

Published in:
Zenodo
Edition:
Version v1
Date Issued:
31.10.2022
DOI:
10.5281/zenodo.7267845
DOI:
10.5281/zenodo.7267844
Language:
English
Type of Resource:
Text
Extent:
2 Dateien
Publisher:
Zenodo
Keywords:
Escherichia coli; Genomic data; One Health; OHEJP BeONE Project
DDC subject of DNB:
570 Life science
URL:
https://zenodo.org/record/7267845
Link to Context:
https://zenodo.org/communities/ohejp/
Link to Context:
https://onehealthejp.eu/jrp-beone
Institution:
Friedrich-Loeffler-Institut, Institute of Bacterial Infections and Zoonoses

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