Article CC BY 4.0
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Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management

Affiliation
UMR AGAP, Montpellier University, CIRAD, INRAE, Institut Agro-Montpellier SupAgro, 34060 Montpellier, France
Savoi, Stefania;
Affiliation
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy
Arapitsas, Panagiotis;
Affiliation
SVQV, University of Strasbourg, INRAE, F-68000 Colmar, France
Duchêne, Éric;
Affiliation
UMR PAM Université de Bourgogne/Agro Sup Dijon, Institut Universitaire de la Vigne et du Vin, Jules Guyot, F-21000 Dijon, France
Nikolantonaki, Maria;
Affiliation
Laboratorio de Análisis Del Aroma y Enología, Departamento de Química Analítica, Facultad de Ciencias, Instituto Agroalimentario de Aragón (IA2), Universidad de Zaragoza, Calle de Pedro Cerbuna 12, 50009 Zaragoza, Spain
Ontañón, Ignacio;
Affiliation
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy
Carlin, Silvia;
GND
1021995673
Affiliation
Julius Kühn-Institute (JKI), Institute for Grapevine Breeding, Germany
Schwander, Florian;
Affiliation
UMR PAM Université de Bourgogne/Agro Sup Dijon, Institut Universitaire de la Vigne et du Vin, Jules Guyot, F-21000 Dijon, France
Gougeon, Régis D.;
Affiliation
CBQF—Centro de Biotecnologia e Química Fina.—Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua de Diogo Botelho, 1327, 4169-005 Porto, Portugal
Ferreira, António César Silva;
GND
1171257287
Affiliation
Laboratory of Analytical Chemistry, Department of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
Theodoridis, Georgios;
GND
1059151928
Affiliation
Julius Kühn-Institute (JKI), Institute for Grapevine Breeding, Germany
Töpfer, Reinhard;
Affiliation
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy
Vrhovsek, Urska;
Affiliation
Université Paris-Saclay, INRAE, URGI, 78026 Versailles, France
Adam-Blondon, Anne-Francoise;
GND
114975642X
Affiliation
Department of Biotechnology, University of Verona, 37134 Verona, Italy
Pezzotti, Mario;
Affiliation
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy; Department of Cellular, Computational and Integrative Biology, CIBIO, University of Trento, 38123 Trento, Italy
Mattivi, Fulvio

In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed.

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