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Towards an open grapevine information system

Affiliation
URGI, UR1164 INRA, Université Paris-Saclay, Versailles 78026, France
Adam-Blondon, A.-F.;
Affiliation
URGI, UR1164 INRA, Université Paris-Saclay, Versailles 78026, France
Alaux, M.;
Affiliation
URGI, UR1164 INRA, Université Paris-Saclay, Versailles 78026, France
Pommier, C.;
Affiliation
Department of Viticulture and Enology, University of California, Davis, CA 95616, USA
Cantu, D.;
Affiliation
Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
Cheng, Z.-M.;
Affiliation
Department of Biochemistry and Molecular Biology, University of Nevada, Reno, NV 89557, USA
Cramer, G,R.;
Affiliation
CSIRO Agriculture and Food, Waite Campus, WIC West Building, PMB2, Glen Osmond, South Australia 5064, Australia
Davies, C.;
GND
1199577243
Affiliation
Université de Bordeaux, ISVV, EGFV, UMR 1287, F-33140 Villenave d’Ornon, France
Delrot, Serge;
Affiliation
Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
Deluc, L.;
Affiliation
Istituto di Genomica Applicata, Udine 33100, Italy
Di Gaspero, G.;
Affiliation
Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño 26006, Spain
Grimplet, J.;
Affiliation
Plant Science Department, South Dakota State University, BioSNTR, Brookings, SD 57007, USA
Fennell, A.;
Affiliation
United States Department of Agriculture-Agricultural Research Service-Grape Genetics Research Unit, Geneva, NY 14456, USA
Londo, J. P.;
Affiliation
European Molecular Biology Laboratory, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Kersey, P.;
Affiliation
Dipartimento Qualità Alimentare e Nutrizione, Centro Ricerca ed Innovazione Fondazione Edmund Mach, Via E. Mach 1, 38010 San Michele all'Adige, Italia
Mattivi, F.;
Affiliation
Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
Naithani, S.;
Affiliation
UMR Mistea, INRA, Montpellier 34060, France
Neveu, P.;
Affiliation
University of Bordeaux, CBiB, Bordeaux 33000, France; University of Bordeaux, CNRS/LaBRI, Talence 33405, France
Nikolski, M.;
GND
114975642X
Affiliation
Department of Biotechnology, Università degli Studi di Verona, Verona 37134, Italy
Pezzotti, Mario;
GND
1059090953
Affiliation
Horticulture Section, School of Integrative Plant Science, Cornell University, Geneva, NY 14456, USA
Reisch, Bruce;
GND
1059151928
Affiliation
Julius Kühn-Institute (JKI), Institute for Grapevine Breeding, Germany
Töpfer, Reinhard;
Affiliation
Department of Viticulture and Oenology, Institute for Wine Biotechnology, Stellenbosch University, Stellenbosch, Matieland 7602, South Africa
Vivier, M. A.;
Affiliation
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; US Department of Agriculture-Agricultural Research Service, NEA Robert W. Holley Center for Agriculture and Health, Cornell University, Ithaca, NY 14853, USA
Ware, D.;
Affiliation
URGI, UR1164 INRA, Université Paris-Saclay, Versailles 78026, France
Quesneville, H.

Viticulture, like other fields of agriculture, is currently facing important challenges that will be addressed only through sustained, dedicated and coordinated research. Although the methods used in biology have evolved tremendously in recent years and now involve the routine production of large data sets of varied nature, in many domains of study, including grapevine research, there is a need to improve the findability, accessibility, interoperability and reusability (FAIR-ness) of these data. Considering the heterogeneous nature of the data produced, the transnational nature of the scientific community and the experience gained elsewhere, we have formed an open working group, in the framework of the International Grapevine Genome Program (www.vitaceae.org), to construct a coordinated federation of information systems holding grapevine data distributed around the world, providing an integrated set of interfaces supporting advanced data modeling, rich semantic integration and the next generation of data mining tools. To achieve this goal, it will be critical to develop, implement and adopt appropriate standards for data annotation and formatting. The development of this system, the GrapeIS, linking genotypes to phenotypes, and scientific research to agronomical and oeneological data, should provide new insights into grape biology, and allow the development of new varieties to meet the challenges of biotic and abiotic stress, environmental change, and consumer demand.

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