Artikel Alle Rechte vorbehalten
referiert
Veröffentlicht

Boosting AthaMap database content with data from protein binding microarrays

Zugehörigkeit
Technische Universität Braunschweig, Institut für Genetik, Spielmannstr. 7, D-38106 Braunschweig, Germany
Hehl, Reinhard;
Zugehörigkeit
Technische Universität Braunschweig, Institut für Genetik, Spielmannstr. 7, D-38106 Braunschweig, Germany
Norval, Leo;
Zugehörigkeit
Technische Universität Braunschweig, Institut für Genetik, Spielmannstr. 7, D-38106 Braunschweig, Germany
Romanov, Artyom;
GND
1059146991
Zugehörigkeit
Julius Kühn-Institute (JKI), Institute for Breeding Research on Agricultural Crops, Germany
Bülow, Lorenz

The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) and small RNA target sites for the whole Arabidopsis thaliana genome. With the advent of protein binding microarrays (PBM), the number of known TFBS for A. thaliana transcription factors (TFs) has increased dramatically. Using 113 positional weight matrices (PWMs) generated from a single PBM study and representing a total number of 68 different TFs, the number of predicted TFBS in AthaMap was now increased by about 3.8 × 107 to 4.9 × 107. The number of TFs with PWM-predicted TFBS annotated in AthaMap has increased to 126, representing a total of 29 TF families and newly including ARF, AT-Hook, YABBY, LOB/AS2 and SRS. Furthermore, links from all Arabidopsis TFs and genes to the newly established Arabidopsis Information Portal (AIP) have been implemented. With this qualitative and quantitative update, the improved AthaMap increases its value as a resource for the analysis of A. thaliana gene expression regulation at www.athamap.de.

Dateien

Zitieren

Zitierform:
Zitierform konnte nicht geladen werden.

Zugriffsstatistik

Gesamt:
Volltextzugriffe:
Metadatenansicht:
12 Monate:
Volltextzugriffe:
Metadatenansicht:

Rechte

Rechteinhaber: The Author 2015.

Nutzung und Vervielfältigung:
Alle Rechte vorbehalten