Virus Evolution

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1. 2024

   • Heft author’s final manuscript: High pathogenic avian influenza A(H5) viruses of clade 2.3.4.4b in Europe – why trends of virus evolution are more difficult to predict

     Fusaro, Alice; Zecchin, Bianca; Giussani, Edoardo; Palumbo, Elisa; Agüero-García, Montserrat; Bachofen, Claudia; Bálint, Ádám; Banihashem, Fereshteh; Banyard, Ashley C.; Beerens, Nancy; Bourg, Manon; Briand, Francois-Xavier; Bröjer, Caroline; Brown, Ian H.; Brugger, Brigitte; Byrne, Alexander M. P.; Cana, Armend; Christodoulou, Vasiliki; Dirbakova, Zuzana; Fagulha, Teresa; Fouchier, Ron A. M.; Garza-Cuartero, Laura; Georgiades, George; Gjerset, Britt; Grasland, Beatrice; Groza, Oxana; Harder, Timm C.; Henriques, Ana Margarida; Hjulsager, Charlotte Kristiane; Ivanova, Emiliya; Janeliunas, Zygimantas; Krivko, Laura; Lemon, Ken; Liang, Yuan; Lika, Aldin; Malik, Péter; McMenamy, Michael J.; Nagy, Alexander; Nurmoja, Imbi; Onita, Iuliana; Pohlmann, Anne; Revilla-Fernández, Sandra; Sánchez-Sánchez, Azucena; Savic, Vladimir; Slavec, Brigita; Smietanka, Krzysztof; Snoeck, Chantal J; Steensels, Mieke; Svansson, Vilhjálmur; Swieton, Edyta; Tammiranta, Niina; Tinak, Martin; Borm, Steven Van; Zohari, Siamak; Adlhoch, Cornelia; Baldinelli, Francesca; Terregino, Calogero; Monne, Isabella
2. 2023

   • Jg. 9: Diving Deep into Fish Bornaviruses: Uncovering Hidden Diversity and Transcriptional Strategies through Comprehensive Data Mining

     Eshak, Mirette; Rubbenstroth, Dennis; Beer, Martin; Pfaff, Florian

   • Jg. 9: Continuous presence of genetically diverse rustrela virus lineages in yellow-necked field mouse reservoir populations in northeastern Germany

     Nippert, Sina; Rubbenstroth, Dennis; Geers, Jessica Anna; Ebinger, Arnt; Hoffmann, Donata; Breithaupt, Angele; Wylezich, Claudia; Wang, Xuejing; Haring, Viola C.; Starcky, Philip; Fruci, Paola; Langner, Christoph; Trapp, Christin; Schulz, Heiko; Stubbe, Wilko; Imholt, Christian; Heckel, Gerald; Beer, Martin; Pfaff, Florian; Ulrich, Rainer G.

   • Jg. 9: An advanced sequence clustering and designation workflow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany

     Santos, Pauline Dianne; Günther, Anne; Keller, Markus; Homeier-Bachmann, Timo; Groschup, Martin H.; Beer, Martin; Höper, Dirk; Ziegler, Ute
3. 2022

   • Jg. 8: Disentangling the Role of Poultry Farms and Wild Birds in the Spread of Highly Pathogenic Avian Influenza Virus in Europe

     Guinat, Claire; Valenzuela Agui, Cecilia; Vaughan, Timothy G; Scire, Jérémie; Pohlmann, Anne; Staubach, Christoph; King, Jacqueline; Swieton, Edyta; Dan, Adam; Cernikova, Lenka; Ducatez, Mariette F; Stadler, Tanja

   • Jg. 8: Genetic and Biological Characteristics of Species A Rotaviruses Detected in Common Shrews Suggest a Distinct Evolutionary Trajectory

     Falkenhagen, Alexander; Tausch, Simon H.; Labutin, Anton; Grützke, Josephine; Heckel, Gerald; Ulrich, Rainer G.; Johne, Reimar

   • Jg. 8: Highly pathogenic avian influenza virus incursions of subtype H5N8, H5N5, H5N1, H5N4, and H5N3 in Germany during 2020-21

     S. 1

     King, Jacqueline; Harder, Timm C.; Globig, Anja; Stacker, Lina; Günther, Anne; Grund, Christian; Beer, Martin; Pohlmann, Anne
4. 2021

   • Jg. 7: Population structure of Cydia pomonella granulovirus isolates revealed by quantitative analysis of genetic variation

     S. veaa073

     Fan, Jiangbin; Jehle, Johannes A.; Wennmann, Jörg T.

   • Jg. 7: In action — an early warning system for the detection of unexpected or novel pathogens

     Santos, Pauline Dianne; Ziegler, Ute; Szillat, Kevin P.; Szentiks, Claudia A.; Strobel, Birte; Skuballa, Jasmin; Merbach, Sabine; Grothmann, Pierre; Tews, Birke Andrea; Beer, Martin; Höper, Dirk
5. 2020

   • Jg. 6: Genetic incompatibilities and reduced transmission in chickens may limit the evolution of reassortants between H9N2 and panzootic H5N8 clade 2.3.4.4 avian influenza virus showing high virulence for mammals

     S. veaa077

     Mostafa, Ahmed; Blaurock, Claudia; Scheibner, David; Müller, Christin; Blohm, Ulrike; Schäfer, Alexander; Gischke, Marcel; Salaheldin, Ahmed H.; Nooh, Hanaa Z.; Ali, Mohamed A.; Breithaupt, Angele; Mettenleiter, Thomas C.; Pleschka, Stephan; Abd el-Whab, El-Sayed Mohammed

   • Jg. 6: Full-genome sequencing of German rabbit haemorrhagic disease virus uncovers recombination between RHDV (GI.2) and EBHSV (GII.1)

     S. veaa080

     Szillat, Kevin; Höper, Dirk; Beer, Martin; König, Patricia
6. 2019

   • Jg. 5: Co-circulation of genetically distinct highly pathogenic avian influenza A clade 2.3.4.4 (H5N6) viruses in wild waterfowl and poultry in Europe and East Asia, 2017–18

     S. vez004

     Kim, Yong-Joo; Poen, Marjolein J.; Fouchier, Ron A. M.; Kelder, Leon; Savic, Vladimir; Beer, Martin; Dan, Adam; Lambrecht, Benedicte; Oude Munnink, Bas B.; Bestebroer, Theo M.; Lewis, Nicola S.; Kuiken, Thijs; Richard, Mathilde; Venkatesh, Divya; Pohlmann, Anne; Brown, Ian H.; Vuong, Oanh; Steensels, Mieke; de Meulder, Dennis; Koopmans, Marion P. G.; Lee, Youn-Jeong; Scheuer, Rachel D.
7. 2017

   • Jg. 3: Genetic analysis of a rabies virus host shift event reveals within-host viral dynamics in a new host

     S. vex038

     Marston, D. A.; Horton, D. L.; Nunez, J.; Ellis, R. J.; Orton, R. J.; Johnson, N.; Banyard, A. C.; McElhinney, L. M.; Freuling, Conrad Martin; Fırat, M.; Ünal, N.; Müller, Thomas; de Lamballerie, X.; Fooks, A. R.
8. 2015

   • Jg. 1: A diverse group of small circular ssDNA viral genomes in human and non-human primate stools

     S. vev017

     Ng, T. F. F.; Zhang, W.; Sachsenröder, J.; Kondov, N. O.; da Costa, A. C.; Vega, E.; Holtz, L. R.; Wu, G.; Wang, D.; Stine, C. O.; Antonio, M.; Mulvaney, U. S.; Muench, M. O.; Deng, X.; Ambert-Balay, K.; Pothier, P.; Vinjé, J.; Delwart, E.